Assessing Beaked Whale Populations Through Acoustic Monitoring
Our research team is conducting a critical study to assess the population size of two understudied beaked whale species—Cuvier’s beaked whale and the Peruvian beaked whale in the waters off Magdalena Bay, Baja California Sur. By towing a SoundTrap hydrophone over the continental shelf, we’ll collect acoustic data that will help inform ongoing efforts to assess the conservation status of these cryptic species.
Beaked Whales
Beaked whales (Family Ziphiidae) represent one of the most diverse yet least understood groups of marine mammals, comprising 21 species—nearly a quarter of all recognized cetacean species. Despite this remarkable diversity, beaked whales remain enigmatic due to their deep-water oceanic habitat and inconspicuous surface behavior.
These deep-diving specialists typically feed at depths exceeding 1,000 meters, making visual observation exceptionally challenging. Some species have never been identified alive at sea and are known only from stranded specimens. This cryptic nature has resulted in significant knowledge gaps, with 90% of beaked whale species classified as “Data Deficient” by the IUCN Red List, and population trends for all species listed as unknown.

Conservation Challenges
Despite their elusive nature, beaked whales face numerous documented anthropogenic threats:
- Entanglement in fishing gear
- Behavioral and physiological impacts from naval active sonar, sometimes with lethal effects
- Disturbance from commercial shipping and seismic survey noise
- Vulnerability to climate-driven changes in deep-water ecosystems
This diverse set of threats underscores the urgent need for improved assessment methods for beaked whale populations and the impacts of human activities on their persistence.

Methodology
Using acoustic monitoring techniques, we’ll record the characteristic echolocation clicks produced by these deep-diving marine mammals. The analysis will incorporate:
- Detection rates per unit time
- Known vocalization patterns of each species
- Effective detection range of our hydrophone system
Our collaborators will use these parameters to calculate population estimates, providing valuable data on species that have historically been difficult to study through visual observation alone.

Addressing the Challenge of Population Assessment
The challenge of assessing abundance trends for rare or cryptic wildlife species is a long-standing problem in ecology. While traditional visual surveys conducted by organizations like NOAA’s Southwest Fisheries Science Center have accumulated valuable data on beaked whales in the California Current ecosystem since 1991, visual observations alone remain limited.
An acoustic monitoring approach offers significant advantages by:
- Detecting animals when they’re vocalizing underwater, regardless of surface visibility
- Operating continuously throughout day and night
- Functioning effectively in various sea states
- Providing identification capabilities based on species-specific vocalization patterns

Conservation Implications
Reliable population estimates represent a critical first step in conservation efforts for these poorly understood cetaceans. Our research directly contributes to:
- Establishing baseline abundance data against which future changes can be measured
- Enabling assessment of potential impacts from naval exercises, seismic surveys, and other human activities
- Informing the development of targeted conservation strategies and protected areas
- Supporting evidence-based policy decisions regarding noise regulation in marine environments
- Building upon previous methodological advances in Bayesian hierarchical analyses for improved abundance trend inference
By addressing significant knowledge gaps surrounding these cryptic species, our work supports more effective protection measures for beaked whales throughout their range.
Broader Impacts
The data collected through this project will contribute to global conservation efforts for these vulnerable species and provide insights into deep-ocean ecosystem health. Our methods may serve as a model for similar studies in other regions where beaked whales face anthropogenic threats.
Our Collaborators

Dr. Jay Barlow
Senior Scientist at NOAA
Dr. Jay Barlow is a prominent marine mammal expert with over 40 years of experience at the National Oceanic and Atmospheric Administration’s Southwest Fisheries Science Center. With a Ph.D. in Oceanography from Scripps Institution of Oceanography, Dr. Barlow has conducted groundbreaking research on cetacean population dynamics, abundance estimation techniques, and acoustic monitoring methods. His extensive publication record includes over 200 scientific papers focusing on beaked whales, marine mammal conservation, and the impacts of anthropogenic activities on cetacean populations. Dr. Barlow’s pioneering work on passive acoustic monitoring has revolutionized our ability to study deep-diving species like beaked whales, and his recent co-discovery of a potential new beaked whale species highlights his continued contributions to marine mammal science.

Dr. Gustavo Cárdenas Hinojosa
Marine Mammal Research Group, CONANP
Dr. Gustavo Cárdenas-Hinojosa is a distinguished marine mammal researcher specializing in the ecology and conservation of cetaceans in Mexican waters. With a Ph.D. from Universidad Autónoma de Baja California Sur and extensive field experience, Dr. Cárdenas-Hinojosa has made significant contributions to our understanding of beaked whales, vaquita porpoises, and blue whales through his work at Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE). His expertise in passive acoustic monitoring and population assessments has been instrumental in numerous conservation initiatives. Dr. Cárdenas-Hinojosa grew up in Baja California and has dedicated his career to informing and protecting the marine mammals in this region.